| Class '"Abstracts"' Abstract Class | Abstracts-class |
| To extract sentences with nultiple keywords from Abstracts | additional_info |
| To extract sentences containing Alias of the Human Genes from Pubmed abstracts. | alias_fn |
| To Get Alternative names of Genes | altnamesfun |
| To obtain the Buzz Word Index of terms from the Abstracts. | BWI |
| To clean the result of searchabsL | cleanabs |
| Methods for Function 'cleanabs' | cleanabs,Abstracts-method cleanabs-methods |
| To Find the highest frequency of words within clusters | cluster_words |
| Extracts multiple sentence with co-occurrence of two sets of terms) | co_occurrence_advance |
| Extracts sentences with co-occurrence of two sets of terms | co_occurrence_fn |
| To combine the abstracts | combineabs |
| 'Abstracts' Method to Combine Abstracts | combineabs,Abstracts-method combineabs-methods |
| R Data containing words which frequently in text | common_words_new |
| For Context Search | contextSearch |
| Method for Context Search | contextSearch,Abstracts-method contextSearch-methods |
| To calculate the cosine similarity between terms. | cos_sim_calc |
| Cosine Similarity Calculation by Boot Strapping | cos_sim_calc_boot |
| To Retrive the Abstracts for year. | currentabs_fn |
| To find the conclusion from the abstract(s). | Find_conclusion |
| To find the introduction and conclusion from the abstracts. | find_intro_conc_html |
| To Extract Genes from the Abstracts | gene_atomization |
| Function to obtain the Buzz Word Index of Genes from the abstracts. | genes_BWI |
| Data containing Entrez Ids | GeneToEntrez |
| To Search the number of abstracts for Genes | Genewise |
| method to find the abstracts for the given gene. | Genewise,Abstracts-method Genewise-methods |
| function for extracting Digital Object Identifier (DOIs) of papers | get_DOIs |
| To extract the sentences for genes from the corpus. | get_gene_sentences |
| To Get MedLinePlus Summary | get_MedlinePlus |
| To extract NM ids from NCBI. | get_NMids |
| To get the original terms from the corpus. deprecated | get_original_term |
| To get the original terms from the corpus. | get_original_term2 |
| To extract the PMC Ids of the abstracts. | get_PMCIDS |
| To fetch the given PMC article tables. Deprecated | get_PMCtable |
| To extract the Gene sequence from the NCBI. | get_Sequences |
| To get Abstracts for a given term. | getabs |
| 'getabs' To Get abstracts for a term | getabs,Abstracts-method getabs-methods |
| To get Abstracts for a given term. | getabsT |
| To Get Abstracts | getabsT,Abstracts-method getabsT-methods |
| To extract sentences from the Abstracts | Give_Sentences |
| To fetch the sentence from the PMC full text article | Give_Sentences_PMC |
| To extract the abbreviated term. | head_abbrev |
| HGNC Class for package. | HGNC-class |
| R Data containing HGNC2UniprotID data mapping. | HGNC2UniprotID |
| R Data containing HGNC data. | HGNCdata |
| fetch the abstracts using E-utilities. | input_for_find_intro_conc_html |
| To Get Information from Uniprot. | local_uniprotfun |
| To extract the sentences in asbtracts containing gene names from HGNC. | names_fn |
| To read the abstracts from the PubMed saved in XML format. | new_xmlreadabs |
| To extract the sentences containing official gene symbol from abstracts. | official_fn |
| To Find and match the PMIDs to the abstracts. | pmids_to_abstracts |
| To Retrieve the Abstracts from the large corpus for given years. | previousabs_fn |
| To extract the sentences containing Previous symbols of HGNC genes. | prevsymbol_fn |
| To prind the total number of abstracts in an S4 object of class Abstracts , its start and end | printabs |
| function for text annotation using PubTator.Deprecated. | pubtator_function |
| function for text annotation using PubTator | pubtator_function_JSON |
| Function to Convert Pubtator result from list into Table | pubtator_result_list_to_table |
| function for text annotation using PubTator | pubtator3_function |
| To read Abstracts | readabs |
| To read Abstracts | readabsnew |
| To Initiate the Classes. | ready |
| To remove abstracts for the query term. | removeabs |
| 'removeabs' To remove abstracts of a term from the data. | removeabs,Abstracts-method removeabs-methods |
| To Search the abstracts of term(s) in a combination mode. | searchabsL |
| Searching Abstracts | searchabsL,Abstracts-method searchabsL-methods |
| To Search Abstracts | searchabsT |
| 'searchabsT' Searching abstracts | searchabsT,Abstracts-method searchabsT-methods |
| To send abstracts | sendabs |
| To send the Data into a File | sendabs,Abstracts-method sendabs-methods |
| To Tokenize the sentences | SentenceToken |
| Removes extra spaces between words. | space_quasher |
| To find sub-abstracts | subabs |
| Getting subabstracts | subabs,Abstracts-method subabs-methods |
| To make subsets of large corpus. | subsetabs |
| To make subset of Abstracts. | subsetabs,Abstracts-method subsetabs-methods |
| create Term Document Matrix for lsa analysis | tdm_for_lsa |
| To get information about gene from the UniProt.Deprecated. | uniprotfun |
| To fetch the cluster for words | whichcluster |
| Extracts the words associated (to the left and to the right) with a given word | word_associations |
| Atomization of words | word_atomizations |
| To cluster the words | wordscluster |
| To view the words in cluster | wordsclusterview |
| Gene atomization of xml abstracts.Deprecated. | xmlgene_atomizations |
| Gene atomization of xml abstracts. | xmlgene_atomizations_new |
| To read the abstracts from the PubMed saved in XML format. | xmlreadabs |
| Word atomizations of abstracts from xml format. | xmlword_atomizations |
| To Search abstracts Year wise | Yearwise |
| 'Yearwise' Year wise extraction of Abstracts | Yearwise,Abstracts-method Yearwise-methods |
